Pierpaolo BRUSCOLINI,
Lapo Casetti
Politecnico di Torino
Modeling hydration water and its role in polymer
folding
The behaviour of water molecules in the presence of nonpolar solutes is
one of the basic issues to be considered when trying to understand the
mechanism of protein folding. It is commonly believed that hydrophobicity
of nonpolar residues is related to the partial ordering of water molecules
around them. Yet this behaviour is not completely understood even at the
microscopic level, and rarely accounted for in simple models of protein
folding, where the introduction of effective hydrophobic potentials is
usually preferred to more accurate descriptions. In this work we introduce
a model where the role of water can be considered explicitly. Our analytical
results for the free energy, energy and entropy changes upon wetting a
nonpolar monomer are close to those obtained in experiments and simulations.
Resorting to a suitable approximation, we also solve the model in the case
of a hydrophobic homopolymer, and find out that both a "cold" and "warm"
swelling of the polymer take place, reminding the behaviour of real
proteins. The model can be extended to describe heteropolymers and proteins,
and can be efficiently used in computer simulations.